PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA18G00187
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CAMTA
Protein Properties Length: 891aa    MW: 102019 Da    PI: 8.0109
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA18G00187genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-196.62e-30291583117
        CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg...................vevl 81 
                 +e  +rwl+++ei+a+L n++++ +  ++ + pksg+++L++rk++r+fr+DG++wkkkkdgkt++E+he+LKv                      e +
  AA18G00187  29 EEaYSRWLRPNEIHAVLCNHKHFPINVKPVNLPKSGTVLLFDRKMLRNFRRDGHNWKKKKDGKTIKEAHEHLKVWLvtrkgymytmptvtitlplFEGV 127
                 55589*********************************************************************9877888888888888888888888 PP

        CG-1  82 ycyYahseenptfqrrcywlLeeelekivlvhylev 117
                 ++y+   e++++f         +++e+ivlvhy+e+
  AA18G00187 128 TGYWISYENKSSFPSN-----GRSQEHIVLVHYRET 158
                 8888888888888774.....345689999999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143748.17624164IPR005559CG-1 DNA-binding domain
SMARTSM010763.6E-3927159IPR005559CG-1 DNA-binding domain
PfamPF038593.5E-2431102IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.64E-13342428IPR014756Immunoglobulin E-set
CDDcd002045.01E-14528638No hitNo description
Gene3DG3DSA:1.25.40.201.7E-16528642IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.46E-17537652IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.273546611IPR020683Ankyrin repeat-containing domain
SMARTSM002482.7E-6579608IPR002110Ankyrin repeat
PROSITE profilePS5008811.808579611IPR002110Ankyrin repeat
PfamPF136375.9E-6581626No hitNo description
SuperFamilySSF525402.12E-5692793IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001598723745IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.035727751IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011765787IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56766790IPR000048IQ motif, EF-hand binding site
PfamPF006122.7E-4767787IPR000048IQ motif, EF-hand binding site
SMARTSM000156.1843865IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.59844873IPR000048IQ motif, EF-hand binding site
PfamPF006120.23845865IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MDGVGGRLAG SEIHGFHTFR DLDVQTMLEE AYSRWLRPNE IHAVLCNHKH FPINVKPVNL  60
PKSGTVLLFD RKMLRNFRRD GHNWKKKKDG KTIKEAHEHL KVWLVTRKGY MYTMPTVTIT  120
LPLFEGVTGY WISYENKSSF PSNGRSQEHI VLVHYRETLE VAPATPGNSY SSSITDNLSP  180
KLVSEDIISG HHNACNTVCS NSLVVRNHEN KLHEINTLDW DDLLVPSDNS NQPAPTQEDM  240
SYFMEQLQPV VRNSANHENN LACYNTPTDI QSFPGLGETA HQNENGLQSE ESFGRWLNSF  300
ISDSPGSVED PSFESMVTHG QDPSATSVIR NSPSNIPEQV FNITDVSPAW AYSVERTKIL  360
ITGFFHDSFQ HYERSNLFCI CGESCVTAEY LQVGVYRCFL PPQSPGVVDL YLSADGHKPI  420
SQFFSFEHRS HPVLEKAVPQ DDELYKWEEF EFQVRLAHLL FTSSNKISAL STKISPVNIQ  480
EAKKLANRTS HLLNSWAYLM KSIQANEVSF DQAKDHLFEL TLKNRLKEWL LEKVLENRNT  540
KEYDSKGLGV IHLCAVLGYT WSIHLFSWAG ISLDFRDKHG WTALHWAAYY GREKMVAALL  600
SAGARPNLVT DPNKQNLGGC TAADLAQEKG YDGLSAFLAE KSLIAQFKDM KMAGNINGNI  660
EAVKTEMLSP ETVNEEEQSL KDTLAAYRTA AEAAARIQGA FREHELKVRS SAVKFGSKED  720
EVKNIIAAMK IQHAFRNYEM RRKITAAARI QFRFQTWKMR REFLNMRKKT IKIQAVFRGF  780
QVRRQYRKIT WSVGVLEKAI LRWRLKRKGF RGLQLSQTEG NQEESSDPVE DFYKTSQKQA  840
EDRLERSVVR VQAMFRSKKA QKDYRRMKMT HQEAQLEYDE LQERDEMAME T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414383.10.0hypothetical protein EUTSA_v10024342mg
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLV4P8880.0V4P888_EUTSA; Uncharacterized protein
STRINGAT4G16150.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators